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Free, publicly-accessible full text available March 1, 2027
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Free, publicly-accessible full text available April 1, 2026
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With dramatic advancements in biological data generation, genetic rescue and reproductive technologies, and inter-institutional coordination of care across entire animal populations, zoos, aquariums, and their collaborators are uniquely positioned to lead population-wide research benefiting animal wellbeing and species survival. However, procedural and inter-institutional barriers make it exceedingly difficult to access existing zoological biospecimens and data at scale. To address this, the Zoonomics Working Group, representing diverse roles across three zoological associations (AZA, EAZA, WAZA), proposes a biodiversity biobank alliance that develops and delivers shared resources to support the collection, storage, and sharing of biological samples and associated data across the zoological and conservation community. By biobank alliance, we mean a community-guided effort that develops shared resources, standards, ethos, and practices for collecting, storing, and sharing biological samples and associated data voluntarily through transparent processes, consistent with professional accreditation standards and international best practices. While initially focused on addressing the needs and regulatory landscape of U.S. institutions, the alliance is designed to create frameworks that are adaptable and adoptable for international expansion. Such a framework would help the zoological community navigate the ethical, legal, and practical challenges of managing biospecimen collections, making access more efficient, reliable, and robust. Achieving this vision requires collective agreement on ethical principles such as reciprocity, transparency, and data stewardship, ensuring that research is both feasible and proactively supported. Such coordination will drive advances in fundamental biology and accelerate progress in animal health, welfare, management, and biodiversity conservation.more » « lessFree, publicly-accessible full text available October 28, 2026
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Abstract Transparent microelectrode arrays have proven useful in neural sensing, offering a clear interface for monitoring brain activity without compromising high spatial and temporal resolution. The current landscape of transparent electrode technology faces challenges in developing durable, highly transparent electrodes while maintaining low interface impedance and prioritizing scalable processing and fabrication methods. To address these limitations, we introduce artifact‐resistant transparent MXene microelectrode arrays optimized for high spatiotemporal resolution recording of neural activity. With 60% transmittance at 550 nm, these arrays enable simultaneous imaging and electrophysiology for multimodal neural mapping. Electrochemical characterization shows low impedance of 563 ± 99 kΩ at 1 kHz and a charge storage capacity of 58 mC cm⁻² without chemical doping. In vivo experiments in rodent models demonstrate the transparent arrays' functionality and performance. In a rodent model of chemically‐induced epileptiform activity, we tracked ictal wavefronts via calcium imaging while simultaneously recording seizure onset. In the rat barrel cortex, we recorded multi‐unit activity across cortical depths, showing the feasibility of recording high‐frequency electrophysiological activity. The transparency and optical absorption properties of Ti₃C₂Tx MXene microelectrodes enable high‐quality recordings and simultaneous light‐based stimulation and imaging without contamination from light‐induced artifacts.more » « lessFree, publicly-accessible full text available February 1, 2026
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AmeriFlux is a network of hundreds of sites across the contiguous United States providing tower-based ecosystem-scale carbon dioxide flux measurements at 30 min temporal resolution. While geographically wide-ranging, over its existence the network has suffered from multiple issues including towers regularly ceasing operation for extended periods and a lack of standardization of measurements between sites. In this study, we use machine learning algorithms to predict CO2 flux measurements at NEON sites (a subset of Ameriflux sites), creating a model to gap-fill measurements when sites are down or replace measurements when they are incorrect. Machine learning algorithms also have the ability to generalize to new sites, potentially even those without a flux tower. We compared the performance of seven machine learning algorithms using 35 environmental drivers and site-specific variables as predictors. We found that Extreme Gradient Boosting (XGBoost) consistently produced the most accurate predictions (Root Mean Squared Error of 1.81 μmolm−2s−1, R2 of 0.86). The model showed excellent performance testing on sites that are ecologically similar to other sites (the Mid Atlantic, New England, and the Rocky Mountains), but poorer performance at sites with fewer ecological similarities to other sites in the data (Pacific Northwest, Florida, and Puerto Rico). The results show strong potential for machine learning-based models to make more skillful predictions than state-of-the-art process-based models, being able to estimate the multi-year mean carbon balance to within an error ±50 gCm−2y−1 for 29 of our 44 test sites. These results have significant implications for being able to accurately predict the carbon flux or gap-fill an extended outage at any AmeriFlux site, and for being able to quantify carbon flux in support of natural climate solutions.more » « less
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As of 03/03/2024, the Sevilleta Long-Term Ecological Research Program is equipped with a total of 65 digital RGB cameras, or PhenoCams, across the Sevilleta National Wildlife Refuge. These cameras are installed on eddy covariance flux towers and at a number of precipitation manipulation experiments to track vegetation phenology and productivity across dryland ecotones. PhenoCams have been paired with eddy covariance flux tower data at the site since 2014, while some Mean-Variance Experiment PhenoCams were installed as recently as June 2023. For information on PhenoCam data processing and formatting, see Richardson et al., 2018, Scientific Data (https://doi.org/10.1038/sdata.2018.28), Seyednasrollah et al., 2019, Scientific Data (https://doi.org/10.1038/s41597-019-0229-9), and the PhenoCam Network web page (https://phenocam.nau.edu/webcam/). The PhenoCam Network uses imagery from digital cameras to track vegetation phenology and seasonal changes in vegetation activity in diverse ecosystems across North America and around the world. Imagery is uploaded to the PhenoCam server hosted at Northern Arizona University, where it is made publicly available in near-real time, every 30 minutes from sunrise to sunset, 365 days a year. The data are processed using simple image analysis tools to yield a measure of canopy greenness, from which phenological metrics are extracted, characterizing the start and end of the growing season. These transition dates have been shown to align well with on-the-ground observations at various research sites. Long-term PhenoCam data can be used to track the impact of climate variability and change on the rhythm of the seasons.more » « less
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Abstract The National Ecological Observatory Network (NEON) provides over 180 distinct data products from 81 sites (47 terrestrial and 34 freshwater aquatic sites) within the United States and Puerto Rico. These data products include both field and remote sensing data collected using standardized protocols and sampling schema, with centralized quality assurance and quality control (QA/QC) provided by NEON staff. Such breadth of data creates opportunities for the research community to extend basic and applied research while also extending the impact and reach of NEON data through the creation of derived data products—higher level data products derived by the user community from NEON data. Derived data products are curated, documented, reproducibly‐generated datasets created by applying various processing steps to one or more lower level data products—including interpolation, extrapolation, integration, statistical analysis, modeling, or transformations. Derived data products directly benefit the research community and increase the impact of NEON data by broadening the size and diversity of the user base, decreasing the time and effort needed for working with NEON data, providing primary research foci through the development via the derivation process, and helping users address multidisciplinary questions. Creating derived data products also promotes personal career advancement to those involved through publications, citations, and future grant proposals. However, the creation of derived data products is a nontrivial task. Here we provide an overview of the process of creating derived data products while outlining the advantages, challenges, and major considerations.more » « less
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Abstract Land surface phenology (LSP) products are currently of large uncertainties due to cloud contaminations and other impacts in temporal satellite observations and they have been poorly validated because of the lack of spatially comparable ground measurements. This study provided a reference dataset of gap-free time series and phenological dates by fusing the Harmonized Landsat 8 and Sentinel-2 (HLS) observations with near-surface PhenoCam time series for 78 regions of 10 × 10 km2across ecosystems in North America during 2019 and 2020. The HLS-PhenoCam LSP (HP-LSP) reference dataset at 30 m pixels is composed of: (1) 3-day synthetic gap-free EVI2 (two-band Enhanced Vegetation Index) time series that are physically meaningful to monitor the vegetation development across heterogeneous levels, train models (e.g., machine learning) for land surface mapping, and extract phenometrics from various methods; and (2) four key phenological dates (accuracy ≤5 days) that are spatially continuous and scalable, which are applicable to validate various satellite-based phenology products (e.g., global MODIS/VIIRS LSP), develop phenological models, and analyze climate impacts on terrestrial ecosystems.more » « less
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